# Aiida-yambo installation failure **URL:** \ **Category:** New to AiiDA\ **Created:** [February 26, 2024, 9:13am UTC](https://aiida.discourse.group/t/aiida-yambo-installation-failure/299 "2024-02-26T09:13:40Z")\ **Posts on this page:** 4\ **Page:** 1
**Author:** ![AmberLEE123456](https://yyz2.discourse-cdn.com/free1/user_avatar/aiida.discourse.group/amberlee123456/32/51_2.png) [@AmberLEE123456](https://aiida.discourse.group/u/AmberLEE123456)\ **Post date:** [February 26, 2024, 9:13am UTC](https://aiida.discourse.group/t/aiida-yambo-installation-failure/299/1 "2024-02-26T09:13:40Z")
Hi, I am following the instruction to install the instruction [Getting the plugin — yambo-aiida 1.1.2 documentation](https://aiida-yambo.readthedocs.io/en/latest/user_guide/get_started/installation.html) Both two methods failed. The same system works well for aiida-quantumespresso and aiida-vasp. Any idea what the problem is? ```auto (aiida_QE_VASP_YAMBO) yang@yang-Inspiron-3670:~/AiiDA/plugin/aiida_quantum_espresso/03_aiida_YAMBO/git$ git clone https://github.com/yambo-code/yambo-aiida.git 正克隆到 'yambo-aiida'... error: RPC 失败。curl 16 Error in the HTTP2 framing layer fatal: 在引用列表之后应该有一个 flush 包 (aiida_QE_VASP_YAMBO) yang@yang-Inspiron-3670:~/AiiDA/plugin/aiida_quantum_espresso/03_aiida_YAMBO/git$ git config --global http.version HTTP/1.1 (aiida_QE_VASP_YAMBO) yang@yang-Inspiron-3670:~/AiiDA/plugin/aiida_quantum_espresso/03_aiida_YAMBO/git$ git clone https://github.com/yambo-code/yambo-aiida.git 正克隆到 'yambo-aiida'... fatal: 无法访问 'https://github.com/yambo-code/yambo-aiida.git/'：GnuTLS recv error (-110): The TLS connection was non-properly terminated. (aiida_QE_VASP_YAMBO) yang@yang-Inspiron-3670:~/AiiDA/plugin/aiida_quantum_espresso/03_aiida_YAMBO/git$ git config --global http.version HTTP/2 (aiida_QE_VASP_YAMBO) yang@yang-Inspiron-3670:~/AiiDA/plugin/aiida_quantum_espresso/03_aiida_YAMBO/git$ git clone https://github.com/yambo-code/yambo-aiida.git 正克隆到 'yambo-aiida'... fatal: 无法访问 'https://github.com/yambo-code/yambo-aiida.git/'：GnuTLS recv error (-110): The TLS connection was non-properly terminated. (aiida_QE_VASP_YAMBO) yang@y ``` ```auto (aiida_QE_VASP_YAMBO) yang@yang-Inspiron-3670:~/AiiDA/plugin/aiida_quantum_espresso/03_aiida_YAMBO$ date && sudo pip --default-timeout=1000000 install aiida-yambo 2024年 02月 26日 星期一 12:57:14 CST [sudo] yang 的密码： Collecting aiida-yambo Using cached aiida_yambo-1.3.0-py3-none-any.whl (57 kB) Collecting aiida-quantumespresso<4.0,>=3.0.0a6 Using cached aiida_quantumespresso-3.5.2-py3-none-any.whl (729 kB) Collecting netcdf4 Using cached netCDF4-1.6.5-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (5.5 MB) Collecting h5py Using cached h5py-3.10.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.8 MB) Collecting aiida-core[atomic_tools,docs]>=1.0.0a2 Using cached aiida_core-2.5.1-py3-none-any.whl (1.3 MB) Collecting pytest Using cached pytest-8.0.2-py3-none-any.whl (333 kB) Requirement already satisfied: paramiko>=2.7.2,~=2.7 in /usr/lib/python3/dist-packages (from aiida-core[atomic_tools,docs]>=1.0.0a2->aiida-yambo) (2.9.3) Collecting pgsu~=0.2.1 Using cached pgsu-0.2.4.tar.gz (9.9 kB) Installing build dependencies ... done Getting requirements to build wheel ... done Preparing metadata (pyproject.toml) ... done Collecting docstring-parser Using cached docstring_parser-0.15-py3-none-any.whl (36 kB) Collecting plumpy~=0.21.6 Using cached plumpy-0.21.10-py3-none-any.whl (74 kB) Collecting jedi<0.19 Using cached jedi-0.18.2-py2.py3-none-any.whl (1.6 MB) Collecting psycopg2-binary~=2.8 Using cached psycopg2_binary-2.9.9-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (3.0 MB) Collecting circus~=0.18.0 Using cached circus-0.18.0-py3-none-any.whl (200 kB) Collecting jinja2~=3.0 Using cached Jinja2-3.1.3-py3-none-any.whl (133 kB) Collecting archive-path~=0.4.2 Using cached archive_path-0.4.2-py3-none-any.whl (18 kB) Collecting disk-objectstore~=1.0 Using cached disk_objectstore-1.0.0-py3-none-any.whl (65 kB) Collecting pyyaml~=6.0 Using cached PyYAML-6.0.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (705 kB) Collecting tqdm~=4.45 Using cached tqdm-4.66.2-py3-none-any.whl (78 kB) Collecting psutil~=5.6 Using cached psutil-5.9.8-cp36-abi3-manylinux_2_12_x86_64.manylinux2010_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (288 kB) Collecting importlib-metadata~=6.0 Using cached importlib_metadata-6.11.0-py3-none-any.whl (23 kB) Collecting alembic~=1.2 Using cached alembic-1.13.1-py3-none-any.whl (233 kB) Collecting pytz~=2021.1 Using cached pytz-2021.3-py2.py3-none-any.whl (503 kB) Collecting upf_to_json~=0.9.2 Using cached upf_to_json-0.9.5-py3-none-any.whl (12 kB) Collecting tabulate~=0.8.5 Using cached tabulate-0.8.10-py3-none-any.whl (29 kB) Collecting sqlalchemy~=2.0 Using cached SQLAlchemy-2.0.27-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (3.1 MB) Collecting click-spinner~=0.1.8 Using cached click_spinner-0.1.10-py2.py3-none-any.whl (4.0 kB) Collecting graphviz~=0.19 Using cached graphviz-0.20.1-py3-none-any.whl (47 kB) Collecting aio-pika~=6.6 Using cached aio_pika-6.8.2-py3-none-any.whl (42 kB) Collecting kiwipy[rmq]~=0.7.7 Using cached kiwipy-0.7.8-py3-none-any.whl (29 kB) Collecting ipython>=7 Using cached ipython-8.22.1-py3-none-any.whl (811 kB) Requirement already satisfied: requests~=2.0 in /usr/lib/python3/dist-packages (from aiida-core[atomic_tools,docs]>=1.0.0a2->aiida-yambo) (2.25.1) Collecting numpy~=1.21 Using cached numpy-1.26.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB) Collecting pydantic~=2.4 Using cached pydantic-2.6.2-py3-none-any.whl (394 kB) Collecting wrapt~=1.11 Using cached wrapt-1.16.0-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (80 kB) Collecting click~=8.1 Using cached click-8.1.7-py3-none-any.whl (97 kB) Collecting spglib<3.0,>=1.14 Using cached spglib-2.3.1-cp310-cp310-manylinux_2_17_x86_64.whl (807 kB) Collecting matplotlib>=3.3.4,~=3.3 Using cached matplotlib-3.8.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (11.6 MB) Collecting pymysql~=0.9.3 Using cached PyMySQL-0.9.3-py2.py3-none-any.whl (47 kB) Collecting PyCifRW~=4.4 Using cached PyCifRW-4.4.6.tar.gz (1.1 MB) Installing build dependencies ... done Getting requirements to build wheel ... done Installing backend dependencies ... done Preparing metadata (pyproject.toml) ... done Collecting pymatgen>=2022.1.20 Using cached pymatgen-2024.2.23-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (10.0 MB) Collecting seekpath>=1.9.3,~=1.9 Using cached seekpath-1.9.7-py2.py3-none-any.whl (86 kB) Collecting ase~=3.18 Using cached ase-3.22.1-py3-none-any.whl (2.2 MB) Collecting sphinx-design~=0.5.0 Using cached sphinx_design-0.5.0-py3-none-any.whl (2.2 MB) Collecting sphinx-intl~=2.1.0 Using cached sphinx_intl-2.1.0-py3-none-any.whl (12 kB) Collecting pydata-sphinx-theme~=0.13.3 Using cached pydata_sphinx_theme-0.13.3-py3-none-any.whl (2.0 MB) Collecting sphinx-notfound-page~=1.0 Using cached sphinx_notfound_page-1.0.0-py3-none-any.whl (8.1 kB) Collecting sphinx-sqlalchemy~=0.2.0 Using cached sphinx_sqlalchemy-0.2.0-py3-none-any.whl (4.9 kB) Collecting myst-nb~=1.0.0 Using cached myst_nb-1.0.0-py3-none-any.whl (79 kB) Collecting sphinxext-rediraffe~=0.2.4 Using cached sphinxext_rediraffe-0.2.7-py3-none-any.whl (8.3 kB) Collecting sphinx-copybutton~=0.5.0 Using cached sphinx_copybutton-0.5.2-py3-none-any.whl (13 kB) Collecting sphinx~=7.2 Using cached sphinx-7.2.6-py3-none-any.whl (3.2 MB) Collecting jsonschema Using cached jsonschema-4.21.1-py3-none-any.whl (85 kB) Collecting packaging Using cached packaging-23.2-py3-none-any.whl (53 kB) Collecting aiida-pseudo~=0.6.1 Using cached aiida_pseudo-0.6.5-py3-none-any.whl (74 kB) Collecting qe-tools~=2.0rc1 Using cached qe_tools-2.2.0-py3-none-any.whl (24 kB) Collecting psycopg2-binary~=2.8 Using cached psycopg2-binary-2.8.6.tar.gz (384 kB) Preparing metadata (setup.py) ... done Collecting xmlschema>=1.2.5,~=1.2 Using cached xmlschema-1.11.3-py3-none-any.whl (356 kB) Collecting aiida-quantumespresso<4.0,>=3.0.0a6 Using cached aiida_quantumespresso-3.5.1-py3-none-any.whl (783 kB) Using cached aiida_quantumespresso-3.5.0-py3-none-any.whl (369 kB) Using cached aiida_quantumespresso-3.4.2-py3-none-any.whl (354 kB) Using cached aiida_quantumespresso-3.4.1-py3-none-any.whl (353 kB) Using cached aiida_quantumespresso-3.4.0-py3-none-any.whl (353 kB) Using cached aiida_quantumespresso-3.3.1-py3-none-any.whl (337 kB) Using cached aiida_quantumespresso-3.3.0-py3-none-any.whl (337 kB) Collecting aiida-pseudo~=0.4.0 Downloading aiida_pseudo-0.4.0-py3-none-any.whl (56 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 56.3/56.3 KB 55.2 kB/s eta 0:00:00 Collecting aiida-quantumespresso<4.0,>=3.0.0a6 Using cached aiida_quantumespresso-3.2.1-py2.py3-none-any.whl (306 kB) Using cached aiida_quantumespresso-3.2.0-py2.py3-none-any.whl (306 kB) Using cached aiida_quantumespresso-3.1.0-py2.py3-none-any.whl (279 kB) Using cached aiida_quantumespresso-3.0.0-py2.py3-none-any.whl (283 kB) Collecting xmlschema==1.0.13 Downloading xmlschema-1.0.13-py2.py3-none-any.whl (307 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 307.5/307.5 KB 27.4 kB/s eta 0:00:00 Collecting qe-tools==1.1.3 Downloading qe-tools-1.1.3.tar.gz (15 kB) Preparing metadata (setup.py) ... done Collecting aiida-quantumespresso<4.0,>=3.0.0a6 Using cached aiida_quantumespresso-3.0.0a6-py3-none-any.whl (258 kB) INFO: pip is looking at multiple versions of aiida-core[atomic-tools,docs] to determine which version is compatible with other requirements. This could take a while. Collecting aiida-core[atomic_tools,docs]>=1.0.0a2 Using cached aiida_core-2.5.0-py3-none-any.whl (1.3 MB) Collecting aiida_core[atomic_tools]>=1.4.4,~=1.4 Using cached aiida_core-1.6.9-py3-none-any.whl (1.2 MB) Collecting importlib_resources Using cached importlib_resources-6.1.2-py3-none-any.whl (34 kB) Collecting ete3~=3.1 Using cached ete3-3.1.3.tar.gz (4.8 MB) Preparing metadata (setup.py) ... done Collecting tzlocal~=2.0 Using cached tzlocal-2.1-py2.py3-none-any.whl (16 kB) Collecting click-config-file~=0.6.0 Using cached click_config_file-0.6.0-py2.py3-none-any.whl (6.0 kB) Collecting circus~=0.17.1 Using cached circus-0.17.2-py3-none-any.whl (204 kB) Collecting click~=7.1 Using cached click-7.1.2-py2.py3-none-any.whl (82 kB) Collecting sqlalchemy~=1.3.10 Using cached SQLAlchemy-1.3.24.tar.gz (6.4 MB) Preparing metadata (setup.py) ... done Requirement already satisfied: markupsafe<2.1 in /usr/lib/python3/dist-packages (from aiida_core[atomic_tools]>=1.4.4,~=1.4->aiida-quantumespresso<4.0,>=3.0.0a6->aiida-yambo) (2.0.1) Collecting django~=2.2 Using cached Django-2.2.28-py3-none-any.whl (7.5 MB) Requirement already satisfied: python-dateutil~=2.8 in /usr/lib/python3/dist-packages (from aiida_core[atomic_tools]>=1.4.4,~=1.4->aiida-quantumespresso<4.0,>=3.0.0a6->aiida-yambo) (2.8.1) Collecting wrapt~=1.11.1 Using cached wrapt-1.11.2.tar.gz (27 kB) Preparing metadata (setup.py) ... done Collecting simplejson~=3.16 Using cached simplejson-3.19.2-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (137 kB) Collecting reentry~=1.3 Using cached reentry-1.3.3-py3-none-any.whl (17 kB) Collecting sqlalchemy-utils~=0.36.0 Using cached SQLAlchemy-Utils-0.36.5.tar.gz (131 kB) Preparing metadata (setup.py) ... done Collecting jinja2~=2.10 Using cached Jinja2-2.11.3-py2.py3-none-any.whl (125 kB) Collecting pamqp~=2.3 Using cached pamqp-2.3.0-py2.py3-none-any.whl (28 kB) Collecting aldjemy~=0.9.1 Using cached aldjemy-0.9.1-py3-none-any.whl (26 kB) Collecting click-completion~=0.5.1 Using cached click-completion-0.5.2.tar.gz (10 kB) Preparing metadata (setup.py) ... done Collecting archive-path~=0.2.1 Using cached archive_path-0.2.1-py3-none-any.whl (17 kB) Collecting pytz~=2019.3 Using cached pytz-2019.3-py2.py3-none-any.whl (509 kB) Collecting plumpy~=0.20.0 Using cached plumpy-0.20.0-py3-none-any.whl (60 kB) Collecting jsonschema Using cached jsonschema-3.2.0-py2.py3-none-any.whl (56 kB) Collecting ipython~=7.20 Using cached ipython-7.34.0-py3-none-any.whl (793 kB) Requirement already satisfied: pyyaml~=5.4 in /usr/lib/python3/dist-packages (from aiida_core[atomic_tools]>=1.4.4,~=1.4->aiida-quantumespresso<4.0,>=3.0.0a6->aiida-yambo) (5.4.1) Collecting spglib~=1.14 Downloading spglib-1.16.5-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (325 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 325.9/325.9 KB 16.7 kB/s eta 0:00:00 Collecting pymatgen!=2019.9.7,<=2022.02.03,>=2019.7.2 Using cached pymatgen-2022.2.1.tar.gz (2.6 MB) Installing build dependencies ... | error error: subprocess-exited-with-error × pip subprocess to install build dependencies did not run successfully. │ exit code: 2 ╰─> [90 lines of output] Collecting oldest-supported-numpy Using cached oldest_supported_numpy-2023.12.21-py3-none-any.whl (4.9 kB) Collecting setuptools>=43.0.0 Using cached setuptools-69.1.1-py3-none-any.whl (819 kB) Collecting Cython>=0.29.23 Downloading Cython-3.0.8-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (3.6 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.6/3.6 MB 24.9 kB/s eta 0:00:00 Collecting numpy==1.21.6 Downloading numpy-1.21.6-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (15.9 MB) ━━━━━━━━━━━━━━━━━━╸ 7.4/15.9 MB 7.7 kB/s eta 0:18:28 ERROR: Exception: Traceback (most recent call last): File "/tmp/pip-standalone-pip-47u4wuwc/ __env_pip__.zip/pip/_vendor/urllib3/response.py", line 438, in _error_catcher yield File "/tmp/pip-standalone-pip-47u4wuwc/ __env_pip__.zip/pip/_vendor/urllib3/response.py", line 519, in read data = self._fp.read(amt) if not fp_closed else b"" File "/tmp/pip-standalone-pip-47u4wuwc/ __env_pip__.zip/pip/_vendor/cachecontrol/filewrapper.py", line 90, in read data = self.__fp.read(amt) File "/usr/lib/python3.10/http/client.py", line 466, in read s = self.fp.read(amt) File "/usr/lib/python3.10/socket.py", line 705, in readinto return self._sock.recv_into(b) File "/usr/lib/python3.10/ssl.py", line 1303, in recv_into return self.read(nbytes, buffer) File "/usr/lib/python3.10/ssl.py", line 1159, in read return self._sslobj.read(len, buffer) TimeoutError: The read operation timed out During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/tmp/pip-standalone-pip-47u4wuwc/ __env_pip__.zip/pip/_internal/cli/base_command.py", line 165, in exc_logging_wrapper status = run_func(*args) File "/tmp/pip-standalone-pip-47u4wuwc/ __env_pip__.zip/pip/_internal/cli/req_command.py", line 205, in wrapper return func(self, options, args) File "/tmp/pip-standalone-pip-47u4wuwc/ __env_pip__.zip/pip/_internal/commands/install.py", line 339, in run requirement_set = resolver.resolve( File "/tmp/pip-standalone-pip-47u4wuwc/ __env_pip__.zip/pip/_internal/resolution/resolvelib/resolver.py", line 94, in resolve result = self._result = resolver.resolve( File "/tmp/pip-standalone-pip-47u4wuwc/ __env_pip__.zip/pip/_vendor/resolvelib/resolvers.py", line 481, in resolve state = resolution.resolve(requirements, max_rounds=max_rounds) File "/tmp/pip-standalone-pip-47u4wuwc/ __env_pip__.zip/pip/_vendor/resolvelib/resolvers.py", line 373, in resolve failure_causes = self._attempt_to_pin_criterion(name) File "/tmp/pip-standalone-pip-47u4wuwc/ __env_pip__.zip/pip/_vendor/resolvelib/resolvers.py", line 213, in _attempt_to_pin_criterion criteria = self._get_updated_criteria(candidate) File "/tmp/pip-standalone-pip-47u4wuwc/ __env_pip__.zip/pip/_vendor/resolvelib/resolvers.py", line 204, in _get_updated_criteria self._add_to_criteria(criteria, requirement, parent=candidate) File "/tmp/pip-standalone-pip-47u4wuwc/ __env_pip__.zip/pip/_vendor/resolvelib/resolvers.py", line 172, in _add_to_criteria if not criterion.candidates: File "/tmp/pip-standalone-pip-47u4wuwc/ __env_pip__.zip/pip/_vendor/resolvelib/structs.py", line 151, in __bool__ return bool(self._sequence) File "/tmp/pip-standalone-pip-47u4wuwc/ __env_pip__.zip/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__ return any(self) File "/tmp/pip-standalone-pip-47u4wuwc/ __env_pip__.zip/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in return (c for c in iterator if id(c) not in self._incompatible_ids) File "/tmp/pip-standalone-pip-47u4wuwc/ __env_pip__.zip/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built candidate = func() File "/tmp/pip-standalone-pip-47u4wuwc/ __env_pip__.zip/pip/_internal/resolution/resolvelib/factory.py", line 215, in _make_candidate_from_link self._link_candidate_cache[link] = LinkCandidate( File "/tmp/pip-standalone-pip-47u4wuwc/ __env_pip__.zip/pip/_internal/resolution/resolvelib/candidates.py", line 288, in __init__ super(). __init__ ( File "/tmp/pip-standalone-pip-47u4wuwc/ __env_pip__.zip/pip/_internal/resolution/resolvelib/candidates.py", line 158, in __init__ self.dist = self._prepare() File "/tmp/pip-standalone-pip-47u4wuwc/ __env_pip__.zip/pip/_internal/resolution/resolvelib/candidates.py", line 227, in _prepare dist = self._prepare_distribution() File "/tmp/pip-standalone-pip-47u4wuwc/ __env_pip__.zip/pip/_internal/resolution/resolvelib/candidates.py", line 299, in _prepare_distribution return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) File "/tmp/pip-standalone-pip-47u4wuwc/ __env_pip__.zip/pip/_internal/operations/prepare.py", line 487, in prepare_linked_requirement return self._prepare_linked_requirement(req, parallel_builds) File "/tmp/pip-standalone-pip-47u4wuwc/ __env_pip__.zip/pip/_internal/operations/prepare.py", line 532, in _prepare_linked_requirement local_file = unpack_url( File "/tmp/pip-standalone-pip-47u4wuwc/ __env_pip__.zip/pip/_internal/operations/prepare.py", line 214, in unpack_url file = get_http_url( File "/tmp/pip-standalone-pip-47u4wuwc/ __env_pip__.zip/pip/_internal/operations/prepare.py", line 94, in get_http_url from_path, content_type = download(link, temp_dir.path) File "/tmp/pip-standalone-pip-47u4wuwc/ __env_pip__.zip/pip/_internal/network/download.py", line 146, in __call__ for chunk in chunks: File "/tmp/pip-standalone-pip-47u4wuwc/ __env_pip__.zip/pip/_internal/cli/progress_bars.py", line 304, in _rich_progress_bar for chunk in iterable: File "/tmp/pip-standalone-pip-47u4wuwc/ __env_pip__.zip/pip/_internal/network/utils.py", line 63, in response_chunks for chunk in response.raw.stream( File "/tmp/pip-standalone-pip-47u4wuwc/ __env_pip__.zip/pip/_vendor/urllib3/response.py", line 576, in stream data = self.read(amt=amt, decode_content=decode_content) File "/tmp/pip-standalone-pip-47u4wuwc/ __env_pip__.zip/pip/_vendor/urllib3/response.py", line 512, in read with self._error_catcher(): File "/usr/lib/python3.10/contextlib.py", line 153, in __exit__ self.gen.throw(typ, value, traceback) File "/tmp/pip-standalone-pip-47u4wuwc/ __env_pip__.zip/pip/_vendor/urllib3/response.py", line 443, in _error_catcher raise ReadTimeoutError(self._pool, None, "Read timed out.") pip._vendor.urllib3.exceptions.ReadTimeoutError: HTTPSConnectionPool(host='files.pythonhosted.org', port=443): Read timed out. [end of output] note: This error originates from a subprocess, and is likely not a problem with pip. error: subprocess-exited-with-error × pip subprocess to install build dependencies did not run successfully. │ exit code: 2 ╰─> See above for output. note: This error originates from a subprocess, and is likely not a problem with pip. ``` Many thanks! Sincerely, Dr. Guoyu Yang Lecturer Jimei Univ, School of Science, Digital Fujian Big Data Modeling and Intelligent Computing Institute 185 Yinjiang Rd., Jimei District, Xiamen,361021 Fujian, China E-mail: [201961000100@jmu.edu.cn](mailto:201961000100@jmu.edu.cn) ---
**Author:** ![AmberLEE123456](https://yyz2.discourse-cdn.com/free1/user_avatar/aiida.discourse.group/amberlee123456/32/51_2.png) [@AmberLEE123456](https://aiida.discourse.group/u/AmberLEE123456)\ **Post date:** [February 26, 2024, 10:26am UTC](https://aiida.discourse.group/t/aiida-yambo-installation-failure/299/2 "2024-02-26T10:26:59Z")
Well, using `pip install .` solves the problem. Does it mean aiida-yambo is calling another name now? ```auto yang@yang-Inspiron-3670:~/AiiDA/plugin/aiida_quantum_espresso/03_aiida_YAMBO/aiida-yambo-master$ pip install . Processing /home/yang/AiiDA/plugin/aiida_quantum_espresso/03_aiida_YAMBO/aiida-yambo-master Installing build dependencies ... done Getting requirements to build wheel ... done Preparing metadata (pyproject.toml) ... done Collecting yambopy@ git+https://github.com/yambo-code/yambopy@aiida-parsing#egg=yambopy (from aiida-yambo==3.0.0) Cloning https://github.com/yambo-code/yambopy (to revision aiida-parsing) to /tmp/pip-install-eueq5b1_/yambopy_c4b8b5035869475da367f5ccc098de2b Running command git clone --filter=blob:none --quiet https://github.com/yambo-code/yambopy /tmp/pip-install-eueq5b1_/yambopy_c4b8b5035869475da367f5ccc098de2b Running command git checkout -b aiida-parsing --track origin/aiida-parsing 切换到一个新分支 'aiida-parsing' 分支 'aiida-parsing' 设置为跟踪来自 'origin' 的远程分支 'aiida-parsing'。 Resolved https://github.com/yambo-code/yambopy to commit ca4e7e22ef625091bb8217f7e5d698350d2e33db Installing build dependencies ... done Getting requirements to build wheel ... done Installing backend dependencies ... done Preparing metadata (pyproject.toml) ... done Collecting aiida-quantumespresso<4.5,>=3.0.0a6 (from aiida-yambo==3.0.0) Downloading aiida_quantumespresso-4.4.0-py3-none-any.whl.metadata (32 kB) Requirement already satisfied: aiida_core<3,>=2.4.1 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from aiida_core[atomic_tools]<3,>=2.4.1->aiida-yambo==3.0.0) (2.5.0) Collecting h5py (from aiida-yambo==3.0.0) Using cached h5py-3.10.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.5 kB) Collecting netcdf4 (from aiida-yambo==3.0.0) Using cached netCDF4-1.6.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (1.8 kB) Requirement already satisfied: numpy>=1.20.1 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from aiida-yambo==3.0.0) (1.26.3) Requirement already satisfied: pandas>=2 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from aiida-yambo==3.0.0) (2.2.0) Requirement already satisfied: pyyaml~=6.0 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from aiida-yambo==3.0.0) (6.0.1) Collecting xarray (from aiida-yambo==3.0.0) Downloading xarray-2024.2.0-py3-none-any.whl.metadata (11 kB) Requirement already satisfied: alembic~=1.2 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from aiida_core<3,>=2.4.1->aiida_core[atomic_tools]<3,>=2.4.1->aiida-yambo==3.0.0) (1.13.1) Requirement already satisfied: archive-path~=0.4.2 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from aiida_core<3,>=2.4.1->aiida_core[atomic_tools]<3,>=2.4.1->aiida-yambo==3.0.0) (0.4.2) Requirement already satisfied: aio-pika~=6.6 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from aiida_core<3,>=2.4.1->aiida_core[atomic_tools]<3,>=2.4.1->aiida-yambo==3.0.0) (6.8.1) Requirement already satisfied: circus~=0.18.0 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from aiida_core<3,>=2.4.1->aiida_core[atomic_tools]<3,>=2.4.1->aiida-yambo==3.0.0) (0.18.0) Requirement already satisfied: click-spinner~=0.1.8 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from aiida_core<3,>=2.4.1->aiida_core[atomic_tools]<3,>=2.4.1->aiida-yambo==3.0.0) (0.1.10) Requirement already satisfied: click~=8.1 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from aiida_core<3,>=2.4.1->aiida_core[atomic_tools]<3,>=2.4.1->aiida-yambo==3.0.0) (8.1.7) Requirement already satisfied: disk-objectstore~=1.0 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from aiida_core<3,>=2.4.1->aiida_core[atomic_tools]<3,>=2.4.1->aiida-yambo==3.0.0) (1.0.0) Requirement already satisfied: docstring-parser in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from aiida_core<3,>=2.4.1->aiida_core[atomic_tools]<3,>=2.4.1->aiida-yambo==3.0.0) (0.15) Requirement already satisfied: graphviz~=0.19 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from aiida_core<3,>=2.4.1->aiida_core[atomic_tools]<3,>=2.4.1->aiida-yambo==3.0.0) (0.20.1) Requirement already satisfied: ipython>=7 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from aiida_core<3,>=2.4.1->aiida_core[atomic_tools]<3,>=2.4.1->aiida-yambo==3.0.0) (8.20.0) Requirement already satisfied: jedi<0.19 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from aiida_core<3,>=2.4.1->aiida_core[atomic_tools]<3,>=2.4.1->aiida-yambo==3.0.0) (0.18.2) Requirement already satisfied: jinja2~=3.0 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from aiida_core<3,>=2.4.1->aiida_core[atomic_tools]<3,>=2.4.1->aiida-yambo==3.0.0) (3.1.3) Requirement already satisfied: kiwipy~=0.7.7 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from kiwipy[rmq]~=0.7.7->aiida_core<3,>=2.4.1->aiida_core[atomic_tools]<3,>=2.4.1->aiida-yambo==3.0.0) (0.7.7) Requirement already satisfied: importlib-metadata~=6.0 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from aiida_core<3,>=2.4.1->aiida_core[atomic_tools]<3,>=2.4.1->aiida-yambo==3.0.0) (6.10.0) Requirement already satisfied: paramiko>=2.7.2,~=2.7 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from aiida_core<3,>=2.4.1->aiida_core[atomic_tools]<3,>=2.4.1->aiida-yambo==3.0.0) (2.12.0) Requirement already satisfied: plumpy~=0.21.6 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from aiida_core<3,>=2.4.1->aiida_core[atomic_tools]<3,>=2.4.1->aiida-yambo==3.0.0) (0.21.7) Requirement already satisfied: pgsu~=0.2.1 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from aiida_core<3,>=2.4.1->aiida_core[atomic_tools]<3,>=2.4.1->aiida-yambo==3.0.0) (0.2.4) Requirement already satisfied: psutil~=5.6 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from aiida_core<3,>=2.4.1->aiida_core[atomic_tools]<3,>=2.4.1->aiida-yambo==3.0.0) (5.9.8) Requirement already satisfied: psycopg2-binary~=2.8 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from aiida_core<3,>=2.4.1->aiida_core[atomic_tools]<3,>=2.4.1->aiida-yambo==3.0.0) (2.9.3) Requirement already satisfied: pydantic~=2.4 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from aiida_core<3,>=2.4.1->aiida_core[atomic_tools]<3,>=2.4.1->aiida-yambo==3.0.0) (2.5.3) Requirement already satisfied: pytz~=2021.1 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from aiida_core<3,>=2.4.1->aiida_core[atomic_tools]<3,>=2.4.1->aiida-yambo==3.0.0) (2021.3) Requirement already satisfied: requests~=2.0 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from aiida_core<3,>=2.4.1->aiida_core[atomic_tools]<3,>=2.4.1->aiida-yambo==3.0.0) (2.31.0) Requirement already satisfied: sqlalchemy~=2.0 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from aiida_core<3,>=2.4.1->aiida_core[atomic_tools]<3,>=2.4.1->aiida-yambo==3.0.0) (2.0.25) Requirement already satisfied: tabulate~=0.8.5 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from aiida_core<3,>=2.4.1->aiida_core[atomic_tools]<3,>=2.4.1->aiida-yambo==3.0.0) (0.8.10) Requirement already satisfied: tqdm~=4.45 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from aiida_core<3,>=2.4.1->aiida_core[atomic_tools]<3,>=2.4.1->aiida-yambo==3.0.0) (4.66.1) Requirement already satisfied: upf_to_json~=0.9.2 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from aiida_core<3,>=2.4.1->aiida_core[atomic_tools]<3,>=2.4.1->aiida-yambo==3.0.0) (0.9.2) Requirement already satisfied: wrapt~=1.11 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from aiida_core<3,>=2.4.1->aiida_core[atomic_tools]<3,>=2.4.1->aiida-yambo==3.0.0) (1.16.0) Requirement already satisfied: PyCifRW~=4.4 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from aiida_core[atomic_tools]<3,>=2.4.1->aiida-yambo==3.0.0) (4.4.6) Requirement already satisfied: ase~=3.18 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from aiida_core[atomic_tools]<3,>=2.4.1->aiida-yambo==3.0.0) (3.22.1) Requirement already satisfied: matplotlib>=3.3.4,~=3.3 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from aiida_core[atomic_tools]<3,>=2.4.1->aiida-yambo==3.0.0) (3.8.2) Requirement already satisfied: pymatgen>=2022.1.20 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from aiida_core[atomic_tools]<3,>=2.4.1->aiida-yambo==3.0.0) (2024.1.27) Requirement already satisfied: pymysql~=0.9.3 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from aiida_core[atomic_tools]<3,>=2.4.1->aiida-yambo==3.0.0) (0.9.3) Requirement already satisfied: seekpath>=1.9.3,~=1.9 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from aiida_core[atomic_tools]<3,>=2.4.1->aiida-yambo==3.0.0) (1.9.7) Requirement already satisfied: spglib<3.0,>=1.14 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from aiida_core[atomic_tools]<3,>=2.4.1->aiida-yambo==3.0.0) (2.2.0) Requirement already satisfied: aiida-pseudo~=1.0 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from aiida-quantumespresso<4.5,>=3.0.0a6->aiida-yambo==3.0.0) (1.5.0) Requirement already satisfied: importlib_resources in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from aiida-quantumespresso<4.5,>=3.0.0a6->aiida-yambo==3.0.0) (6.1.1) Requirement already satisfied: jsonschema in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from aiida-quantumespresso<4.5,>=3.0.0a6->aiida-yambo==3.0.0) (4.21.1) INFO: pip is looking at multiple versions of aiida-quantumespresso to determine which version is compatible with other requirements. This could take a while. Collecting aiida-quantumespresso<4.5,>=3.0.0a6 (from aiida-yambo==3.0.0) Downloading aiida_quantumespresso-4.3.0-py3-none-any.whl.metadata (32 kB) Requirement already satisfied: packaging in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from aiida-quantumespresso<4.5,>=3.0.0a6->aiida-yambo==3.0.0) (23.2) Requirement already satisfied: qe-tools~=2.0 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from aiida-quantumespresso<4.5,>=3.0.0a6->aiida-yambo==3.0.0) (2.0.0) Collecting xmlschema>=1.2.5,~=1.2 (from aiida-quantumespresso<4.5,>=3.0.0a6->aiida-yambo==3.0.0) Downloading xmlschema-1.11.3-py3-none-any.whl.metadata (8.3 kB) Requirement already satisfied: python-dateutil>=2.8.2 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from pandas>=2->aiida-yambo==3.0.0) (2.8.2) Requirement already satisfied: tzdata>=2022.7 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from pandas>=2->aiida-yambo==3.0.0) (2023.4) Collecting cftime (from netcdf4->aiida-yambo==3.0.0) Downloading cftime-1.6.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.6 kB) Requirement already satisfied: certifi in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from netcdf4->aiida-yambo==3.0.0) (2024.2.2) Requirement already satisfied: scipy in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from yambopy@ git+https://github.com/yambo-code/yambopy@aiida-parsing#egg=yambopy->aiida-yambo==3.0.0) (1.12.0) Requirement already satisfied: lxml in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from yambopy@ git+https://github.com/yambo-code/yambopy@aiida-parsing#egg=yambopy->aiida-yambo==3.0.0) (5.1.0) Requirement already satisfied: monty in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from yambopy@ git+https://github.com/yambo-code/yambopy@aiida-parsing#egg=yambopy->aiida-yambo==3.0.0) (2024.1.26) Requirement already satisfied: pint~=0.23.0 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from aiida-pseudo~=1.0->aiida-quantumespresso<4.5,>=3.0.0a6->aiida-yambo==3.0.0) (0.23) Requirement already satisfied: aiormq<4,>=3.2.3 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from aio-pika~=6.6->aiida_core<3,>=2.4.1->aiida_core[atomic_tools]<3,>=2.4.1->aiida-yambo==3.0.0) (3.3.1) Requirement already satisfied: yarl in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from aio-pika~=6.6->aiida_core<3,>=2.4.1->aiida_core[atomic_tools]<3,>=2.4.1->aiida-yambo==3.0.0) (1.9.4) Requirement already satisfied: Mako in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from alembic~=1.2->aiida_core<3,>=2.4.1->aiida_core[atomic_tools]<3,>=2.4.1->aiida-yambo==3.0.0) (1.3.1) 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stack-data->ipython>=7->aiida_core<3,>=2.4.1->aiida_core[atomic_tools]<3,>=2.4.1->aiida-yambo==3.0.0) (0.2.2) Requirement already satisfied: mpmath>=0.19 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from sympy->pymatgen>=2022.1.20->aiida_core[atomic_tools]<3,>=2.4.1->aiida-yambo==3.0.0) (1.3.0) Requirement already satisfied: multidict>=4.0 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from yarl->aio-pika~=6.6->aiida_core<3,>=2.4.1->aiida_core[atomic_tools]<3,>=2.4.1->aiida-yambo==3.0.0) (6.0.4) Requirement already satisfied: pycparser in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from cffi>=1.12->cryptography>=2.5->paramiko>=2.7.2,~=2.7->aiida_core<3,>=2.4.1->aiida_core[atomic_tools]<3,>=2.4.1->aiida-yambo==3.0.0) (2.21) Downloading aiida_quantumespresso-4.3.0-py3-none-any.whl (797 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 797.1/797.1 kB 26.0 kB/s eta 0:00:00 Downloading h5py-3.10.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.8 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.8/4.8 MB 27.0 kB/s eta 0:00:00 Downloading netCDF4-1.6.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (5.5 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 5.5/5.5 MB 175.7 kB/s eta 0:00:00 Downloading xarray-2024.2.0-py3-none-any.whl (1.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.1/1.1 MB 2.4 MB/s eta 0:00:00 Downloading xmlschema-1.11.3-py3-none-any.whl (356 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 356.5/356.5 kB 3.0 MB/s eta 0:00:00 Downloading cftime-1.6.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (1.4 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.4/1.4 MB 2.9 MB/s eta 0:00:00 Downloading elementpath-2.5.3-py3-none-any.whl (181 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 181.4/181.4 kB 3.5 MB/s eta 0:00:00 Building wheels for collected packages: aiida-yambo, yambopy Building wheel for aiida-yambo (pyproject.toml) ... done Created wheel for aiida-yambo: filename=aiida_yambo-3.0.0-py3-none-any.whl size=112837 sha256=52c625bc091385f81765ef459f26120d3179c2529221fee1c4dc8c7f58feb16a Stored in directory: /home/yang/.cache/pip/wheels/88/e9/e0/7a6e7e9cee0915d3e67328ae371d38bf1ac429b68c6b475091 Building wheel for yambopy (pyproject.toml) ... done Created wheel for yambopy: filename=yambopy-0.3.0-py3-none-any.whl size=6166622 sha256=3009c4088c5f625692c113a8916c43055e819f44871f05de78081dee04b3acb7 Stored in directory: /tmp/pip-ephem-wheel-cache-3x77cit6/wheels/ea/b1/0c/81ba45b1bbe59c5e4989d77e834a341f235787c18738670730 Successfully built aiida-yambo yambopy Installing collected packages: h5py, elementpath, cftime, xmlschema, netcdf4, yambopy, xarray, aiida-quantumespresso, aiida-yambo Attempting uninstall: elementpath Found existing installation: elementpath 4.2.1 Uninstalling elementpath-4.2.1: Successfully uninstalled elementpath-4.2.1 Attempting uninstall: xmlschema Found existing installation: xmlschema 2.5.1 Uninstalling xmlschema-2.5.1: Successfully uninstalled xmlschema-2.5.1 Attempting uninstall: aiida-quantumespresso Found existing installation: aiida-quantumespresso 4.5.0 Uninstalling aiida-quantumespresso-4.5.0: Successfully uninstalled aiida-quantumespresso-4.5.0 Successfully installed aiida-quantumespresso-4.3.0 aiida-yambo-3.0.0 cftime-1.6.3 elementpath-2.5.3 h5py-3.10.0 netcdf4-1.6.5 xarray-2024.2.0 xmlschema-1.11.3 yambopy-0.3.0 (aiida_QE_VASP_YAMBO) yang@yang-Inspiron-3670:~/AiiDA/plugin/aiida_quantum_espresso/03_aiida_YAMBO/aiida-yambo-master$ ``` Sincerely, Dr. Guoyu Yang Lecturer Jimei Univ, School of Science, Digital Fujian Big Data Modeling and Intelligent Computing Institute 185 Yinjiang Rd., Jimei District, Xiamen,361021 Fujian, China E-mail: [201961000100@jmu.edu.cn](mailto:201961000100@jmu.edu.cn) ---
**Author:** ![mikibonacci](https://yyz2.discourse-cdn.com/free1/user_avatar/aiida.discourse.group/mikibonacci/32/23_2.png) [@mikibonacci](https://aiida.discourse.group/u/mikibonacci)\ **Post date:** [February 26, 2024, 12:36pm UTC](https://aiida.discourse.group/t/aiida-yambo-installation-failure/299/3 "2024-02-26T12:36:56Z")
Dear Guoyu, from the failed run it seems that you were installing aiida-yambo==1.3.0, which is an older version an may not work anymore with the new AiiDA. maybe it was due to some caching already there. Instead in the new successful run I see that you installed the version 3.0.0 of the plugin, which should correspond to the master branch of the github repository. the pip install -e . should work, you can try also combined with the --no-cache option and/or to clone again the code and be sure that the branch is main. Moreover, I suggest you to refer to the last documentation available: [Welcome to documentation of the aiida-yambo package! — aiida-yambo 3.1.0 documentation](https://aiida-yambo.readthedocs.io/en/master/) If you have other questions on the usage of the plugin, please let me know! (I am the developer of the plugin and related workflows) Cheers, Miki ---
**Author:** ![AmberLEE123456](https://yyz2.discourse-cdn.com/free1/user_avatar/aiida.discourse.group/amberlee123456/32/51_2.png) [@AmberLEE123456](https://aiida.discourse.group/u/AmberLEE123456)\ **Post date:** [February 26, 2024, 2:07pm UTC](https://aiida.discourse.group/t/aiida-yambo-installation-failure/299/4 "2024-02-26T14:07:15Z")
Dear Miki, Thank you very much for your timely reply. I reload the file from github [GitHub - yambo-code/aiida-yambo: Aiida Plugin and related Yambo development](https://github.com/yambo-code/aiida-yambo) . But neither `pip install -e . ` nor `sudo pip install --no-cache -e .` works on my local computer. ```auto aiida-yambo-master$ more PKG-INFO 'Version:3.1.0' (aiida_QE_VASP_YAMB ``` ```auto (aiida_QE_VASP_YAMBO) yang@yang-Inspiron-3670:~/AiiDA/tutorial_plugin/aiida_quantum_espresso/03_aiida_YAMBO/02/aiida-yambo-master$ sudo pip install -e . Obtaining file:///home/yang/AiiDA/tutorial_plugin/aiida_quantum_espresso/03_aiida_YAMBO/02/aiida-yambo-master Installing build dependencies ... done Checking if build backend supports build_editable ... done Getting requirements to build editable ... done Installing backend dependencies ... done Preparing editable metadata (pyproject.toml) ... done Collecting yambopy@ git+https://github.com/yambo-code/yambopy@aiida-parsing#egg=yambopy Cloning https://github.com/yambo-code/yambopy (to revision aiida-parsing) to /tmp/pip-install-3jbc7uxr/yambopy_7fd43b3966b9461d8fb203ca6083b15e Running command git clone --filter=blob:none --quiet https://github.com/yambo-code/yambopy /tmp/pip-install-3jbc7uxr/yambopy_7fd43b3966b9461d8fb203ca6083b15e fatal: 无法访问 'https://github.com/yambo-code/yambopy/'：GnuTLS recv error (-110): The TLS connection was non-properly terminated. error: subprocess-exited-with-error × git clone --filter=blob:none --quiet https://github.com/yambo-code/yambopy /tmp/pip-install-3jbc7uxr/yambopy_7fd43b3966b9461d8fb203ca6083b15e did not run successfully. │ exit code: 128 ╰─> See above for output. note: This error originates from a subprocess, and is likely not a problem with pip. error: subprocess-exited-with-error × git clone --filter=blob:none --quiet https://github.com/yambo-code/yambopy /tmp/pip-install-3jbc7uxr/yambopy_7fd43b3966b9461d8fb203ca6083b15e did not run successfully. │ exit code: 128 ╰─> See above for output. note: This error originates from a subprocess, and is likely not a problem with pip. (aiida_QE_VASP_YAMBO) yang@yang-Inspiron-3670:~/AiiDA/tutorial_plugin/aiida_quantum_espresso/03_aiida_YAMBO/02/aiida-yambo-master$ sudo pip install --no-cache -e . Obtaining file:///home/yang/AiiDA/tutorial_plugin/aiida_quantum_espresso/03_aiida_YAMBO/02/aiida-yambo-master Installing build dependencies ... done Checking if build backend supports build_editable ... done Getting requirements to build editable ... done Installing backend dependencies ... done Preparing editable metadata (pyproject.toml) ... done Collecting yambopy@ git+https://github.com/yambo-code/yambopy@aiida-parsing#egg=yambopy Cloning https://github.com/yambo-code/yambopy (to revision aiida-parsing) to /tmp/pip-install-lm232e2w/yambopy_139cc9e35a8a42339c4637afa5e02c1f Running command git clone --filter=blob:none --quiet https://github.com/yambo-code/yambopy /tmp/pip-install-lm232e2w/yambopy_139cc9e35a8a42339c4637afa5e02c1f fatal: 无法访问 'https://github.com/yambo-code/yambopy/'：Failed to connect to github.com port 443 after 134232 ms: 连接超时 fatal: 无法访问 'https://github.com/yambo-code/yambopy/'：GnuTLS recv error (-110): The TLS connection was non-properly terminated. fatal: 无法访问 'https://github.com/yambo-code/yambopy/'：Failed to connect to github.com port 443 after 133937 ms: 连接超时 error: unable to read sha1 file of .gitignore (14b4baacc600e450dc110e44dfff25dcdddaee0b) ``` It seems the aiida-yambo stuck at yambopy, but I have already installed yambopy ```auto yang@yang-Inspiron-3670:~/AiiDA/tutorial_plugin/aiida_quantum_espresso/03_aiida_YAMBO/02/aiida-yambo-master$ pip install --upgrade yambopy Requirement already satisfied: yambopy in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (0.3.0) Requirement already satisfied: numpy in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from yambopy) (1.26.3) Requirement already satisfied: scipy in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from yambopy) (1.12.0) Requirement already satisfied: netCDF4 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from yambopy) (1.6.5) Requirement already satisfied: matplotlib in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from yambopy) (3.8.2) Requirement already satisfied: pyyaml in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from yambopy) (6.0.1) Requirement already satisfied: lxml in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from yambopy) (5.1.0) Requirement already satisfied: monty in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from yambopy) (2024.1.26) Requirement already satisfied: contourpy>=1.0.1 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from matplotlib->yambopy) (1.2.0) Requirement already satisfied: cycler>=0.10 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from matplotlib->yambopy) (0.12.1) Requirement already satisfied: fonttools>=4.22.0 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from matplotlib->yambopy) (4.47.2) Requirement already satisfied: kiwisolver>=1.3.1 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from matplotlib->yambopy) (1.4.5) Requirement already satisfied: packaging>=20.0 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from matplotlib->yambopy) (23.2) Requirement already satisfied: pillow>=8 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from matplotlib->yambopy) (9.4.0) Requirement already satisfied: pyparsing>=2.3.1 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from matplotlib->yambopy) (3.1.1) Requirement already satisfied: python-dateutil>=2.7 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from matplotlib->yambopy) (2.8.2) Requirement already satisfied: cftime in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from netCDF4->yambopy) (1.6.3) Requirement already satisfied: certifi in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from netCDF4->yambopy) (2024.2.2) Requirement already satisfied: six>=1.5 in /home/yang/miniforge3/envs/aiida_QE_VASP_YAMBO/lib/python3.11/site-packages (from python-dateutil>=2.7->matplotlib->yambopy) (1.16.0) ``` Sincerely, Dr. Guoyu Yang Lecturer Jimei Univ, School of Science, Digital Fujian Big Data Modeling and Intelligent Computing Institute 185 Yinjiang Rd., Jimei District, Xiamen,361021 Fujian, China E-mail: [201961000100@jmu.edu.cn](mailto:201961000100@jmu.edu.cn)